Download genome data


Welcome and thank you for using The Peanut Genome Resource.
Please refer to the following important information before download Peanut Genome Resource:
  • Annotation of all Gene IDs and sequences can be searched in Search function.
  • All contents in Peanut Genome Resource is for ACADEMIC USE ONLY.
  • If you have used the data from Peanut Genome Resource, please use the following citation: Zhuang, W. et al. The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nat. Genet. 51, 865-876 (2019). (PDF)

Genome sequence and assembly data


Sample name Status Platform Repository Accession number/URL
Peanut chromosome Pseudomolecules Pacbio NCBI PRJNA480120
Peanut genome assembly (contigs) Contig sequences Pacbio NCBI FAFU001
Peanut genome assembly (split contigs) Split contig sequences Pacbio FAFU FAFU002
Peanut Shitouqi for Pacbio RNAseq Pacbio reads PacBio FAFU FAFU003
Peanut Shitouqi for HiC seq Hic reads Hi-C FAFU FAFU004
Peanut Shitouqi (zh.h0235) Resequencing reads HiSeq FAFU SRR7617987, SRR7617988, SRR7617989, SRR7617990, SRR7617991 SRR7617992

Illumina RNAseq data


Sample name Status Platform Repository Accession number/URL
Peanut Roots mixed (Root) RNAseq reads HiSeq FAFU FAFU005
Root tips (Rtip) RNAseq reads HiSeq FAFU FAFU006
root nodules (Rnod) RNAseq reads HiSeq FAFU FAFU007
Root and stem (RS) RNAseq reads HiSeq FAFU FAFU008
Stem of different stages (Stem) RNAseq reads HiSeq FAFU FAFU009
Stem tips (Stip) RNAseq reads HiSeq FAFU FAFU010
Leaves mixed (Leaf) RNAseq reads HiSeq FAFU FAFU011
Cotyledon (Cot) RNAseq reads HiSeq FAFU FAFU012
Inflorescence (F) RNAseq reads HiSeq FAFU FAFU013
Pegs in different stages (Peg) RNAseq reads HiSeq FAFU FAFU014
Pod pericarps of 10-20 DAP (10PC) RNAseq reads HiSeq FAFU FAFU015
Pod pericarps of 30-40 DAP (30PC) RNAseq reads HiSeq FAFU FAFU016
Pod pericarps of 50-60 DAP (50PC) RNAseq reads HiSeq FAFU FAFU017
Seed testa of 10-30 DAP (20PT) RNAseq reads HiSeq FAFU FAFU018
Seed testa of 40-60 DAP (40PT) RNAseq reads HiSeq FAFU FAFU019
Embryos of 10-20 DAP (10PE) RNAseq reads HiSeq FAFU FAFU020
Embryos of 20-30 DAP (20PE) RNAseq reads HiSeq FAFU FAFU021
Embryos of 30-40 DAP (30PE) RNAseq reads HiSeq FAFU FAFU022
Embryos of 40-60 DAP (50PE) RNAseq reads HiSeq FAFU FAFU023
Leaves treated with Low temperature (LT) RNAseq reads HiSeq FAFU FAFU024
Leaves of control (LTCK) RNAseq reads HiSeq FAFU FAFU025
Leaves of drought stress (Dry) RNAseq reads HiSeq FAFU FAFU026
Leaves of control (DryCK) RNAseq reads HiSeq FAFU FAFU027
Leaves of ABA treatments (ABA) RNAseq reads HiSeq FAFU FAFU028
Leaves of Br treatments (BR) RNAseq reads HiSeq FAFU FAFU029
Leaves of ETH treatments (ETH) RNAseq reads HiSeq FAFU FAFU030
Leaves of PAC treatments (PAC) RNAseq reads HiSeq FAFU FAFU031
Leaves of SA treatments (SA) RNAseq reads HiSeq FAFU FAFU032
Leaves of non treatments (HorCK) RNAseq reads HiSeq FAFU FAFU033

BSA illumina DNAseq data


Sample name Status Platform Repository Accession number/URL
Yueyou 92 DNA resequencing HiSeq FAFU FAFU034
Xinhuixiaoli DNA resequencing HiSeq FAFU FAFU035
Big seed Bulk of 54 lines DNA resequencing HiSeq FAFU FAFU036
Small seed Bulk of 54 Lines DNA resequencing HiSeq FAFU FAFU037

Resequencing data


Sample name Status Platform Repository Accession number/URL
Fuhuasheng Resequencing reads HiSeq SRA PRJNA509951
Haihua 1 Resequencing reads HiSeq SRA PRJNA509953
Baisha1016 Resequencing reads HiSeq SRA PRJNA513228
Luhua 11 Resequencing reads HiSeq SRA PRJNA513229
Shanyou 27 Resequencing reads HiSeq SRA PRJNA513230
Zhonghua 16 Resequencing reads HiSeq SRA PRJNA513232
Yuanza 9102 Resequencing reads HiSeq SRA PRJNA513233
Minhua 6 Resequencing reads HiSeq SRA PRJNA513234
Yuhua 23 Resequencing reads HiSeq SRA PRJNA513240
Minhua 8 Resequencing reads HiSeq SRA PRJNA513241
Hexianqingdou Resequencing reads HiSeq SRA PRJNA513420
Sunoleic95 Resequencing reads HiSeq SRA PRJNA513422
Binyangdagouyao Resequencing reads HiSeq SRA PRJNA513423
Hexiandazidou Resequencing reads HiSeqSRA PRJNA513424
ICG6340 Resequencing reads HiSeq SRA PRJNA513425
Liaoningshilihong Resequencing reads HiSeq SRA PRJNA513427
Arachis pintos Resequencing reads HiSeq SRA PRJNA513430
Arachis duranensis Resequencing reads HiSeq SRA PRJNA513431
Arachis stenosperma Resequencing reads HiSeq SRA PRJNA513432
Arachis batizocoii Resequencing reads HiSeq SRA PRJNA513433
Arachis ipaensis Resequencing reads HiSeq SRA PRJNA513436
Min6-A Resequencing reads HiSeq SRA PRJNA513437
Min8-B Resequencing reads HiSeq SRA PRJNA513438
Minhua 14 Resequencing reads HiSeq SRA PRJNA513440
Arachis hypogaea, [A. magna (ICG 8960) x A. batizocoi (ICG 8209)], [A. duranensis (ICG 8138) x A. batizocoi (ICG 13160)], [A. duranensis (ICG 8123) x A. ipaensis (ICG 8206)], [A. ipaensis (ICG 8206) x A. duranensis (ICG 8123)], Arachis cardenasii, Arachis chiquitana, Arachis stenosperma, Arachis hoehnei, Arachis ipaensis, Arachis stenophylla, Arachis duranensis, Arachis magna, Arachis batizocoi, Resequencing reads HiSeq SRA PRJNA490835

Transcriptome sequencing data


Sample name Status Platform Repository Accession number/URL
Yueyou 92, RNA RNAseq Higseq FAFU FAFU038, FAFU042, FAFU046
Xinhuixiaoli, RNA RNAseq Higseq FAFU FAFU039, FAFU043, FAFU047
Big seed pod pericarp Bulk of 30 lines, mixed RNA RNAseq Higseq FAFU FAFU040
Small seed pod pericarp Bulk of 30 Lines, mixed RNA RNAseq Higseq FAFU FAFU041
Big seed embryo Bulk of 30 lines, mixed RNA RNAseq Higseq FAFU FAFU044
Small seed embryo Bulk of 30 Lines, mixed RNA RNAseq Higseq FAFU FAFU045
Red testa Bulk of 30 lines, mixed RNA RNAseq Higseq FAFU FAFU048
Pink testa Bulk of 30 Lines, mixed RNA RNAseq Higseq FAFU FAFU049

Selected genome DNA fragments sequencing data for genetic map construction


Sample name Status Platform Repository Accession number/URL
267 RIL lines (random selection) Slafseq (illumina) Higseq (Slafseq) FAFU FAFU050
314 RIL lines (random) Slafseq (illumina) Higseq (Slafseq) FAFU FAFU051



Mapping Population Species Publication Ploidy and Genome Size (KB) Last updated Download File
Yueyou92 x Xinhuixiaoli A. hypogaea Un-published AABB 172 23/04/2017
RunnerIAC886_x_anartificial amphidiploid(A.ipaensis’K30076’_x_A. duranensis‘V14167’), associated with other 13 published maps. A. hypogaea,
A. duranensis x
A. stenosperma		 Kenta Shirasawa, et al., 2013 AABB 698 23/04/2017
Zhonghua 5 and ICGV86699 A. hypogaea Xiaojing Zhou, et al., 2014 AABB 113 23/04/2017
SKF2_x_NYF2(F2(SatonokaxKintoki) x F2(YI-0311 xNakateyutaka)) A. hypogaea Kenta Shirasawa, et al., 2012 AABB 277 23/04/2017
Zhonghua10 and ICG12625 A. hypogaea HuangLi, et al., 2016 AABB 283 23/04/2017



File Name Publication Size (KB) Last updated Download File
Plant height QTL and map-QTL Kenta Shirasawa, et al., 2013 28 23/04/2017
QTLs Mapping of 15 traits Un-published 1108 23/04/2017