Marker information




Marker Name seq2C11
Additional Name CC000258;pPGPseq2C11;Seq2C11_c1;Seq2C11_c2
Marker type SSR
Motif / Pattern (TAA/CAC)17
Forward primer (5'-3')
TGACCTCAATTTTGGGGAAG
Reverse primer (5'-3')GCCACTATTCATCGCGGTA
Resource Ferguson et al., 2004
Fonceka et al., 2009
Gautami et al., 2012a
Gautami et al., 2012b
Shirasawa et al., 2013
Sujay et al., 2012
Sequence GATGATGCTTCACTGTTGTCTGCACTAGAAAATAATAGGCAGTGGGAGCAAGCAAGGAACTGGGCCAAGCAGTTGGAGGCCAGTGGAACCCCCTGGAAATCTTCATTGCATCATGTCACTGAGTCTCAGGTAGTATTTATAATTGAAAACCTGCTTGTGACATTCTACAGTTCTTACAAACTGTGACCTCAATTTTGGGGAAGTCTTGAACCAATCTTAAAATCTTCATGTTTATGTTTACAAATTTCACTATTTAATGACTACTTGAACAGCTATTTGGGTTCATAGATAATTTGTAGGCTGAATTAACTTAACATTTGCTCTAAGTATGAGCTCCAATGGAGCTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTACCGCGATGAATAGTGGCAATTTGTGTCATATTTTTGCAAATATGTCTCACCTCTTTTNCTCAACTTTCTTTGCCCCTTATACAAATTCTA


Linkage map Species Marker Name Name used in map Linkage group Position (cM) Reference
TAG 24 x ICGV 86031A. hypogaeaseq2C11pPGPseq2C11LG_AhXIII 136.9 Peanut Base
Ravi et al., 2011
Gautami et al., 2012a
Consensus mapA. hypogaeaseq2C11pPGPseq2C11LG_AhXIII
124.89
Peanut Base
Gautami et al., 2012a
Consensus mapA. hypogaea, A. ipaensis, A. duranensisseq2C11seq2C11A03
190.43
Gautami et al., 2012b
Consensus mapA. hypogaea, A. ipaensis, A. duranensisseq2C11seq2C11B03
140.92
Gautami et al., 2012b
Consensus mapA. hypogaea, A. ipaensis, A. duranensisseq2C11seq2C11A09
147.02
Gautami et al., 2012b
Consensus mapA. hypogaea, A. duranensis, A. stenosperma, A. ipaensis, A. magnaseq2C11Seq2C11_c1A03
103.453
Peanut Base
Shirasawa et al., 2013
Consensus mapA. hypogaea, A. duranensis, A. stenosperma, A. ipaensis, A. magnaseq2C11Seq2C11_c2B03
57.106
Peanut Base
Shirasawa et al., 2013